Alignment of alleles: Channel catfish (Ictalurus punctatus) IGHV6S4

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Germline genomic sequences are needed to confirm if the nucleotide substitutions result from somatic mutations or correspond to allelic polymorphisms.

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20

  AF161271,IGHV6S4*01

                                                        ___________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                         C   K   V   S   G   Y   S   V   S   D   G   S   Y   W           T   H
  AF161271,IGHV6S4*01                   TGT AAA GTG TCT GGA TAT TCA GTA AGT GAT GGC AGC TAC TGG ... ... ACA CAC

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   I   R   Q   P   A   G   K   A   L   E   W   V   A   Q   I   S   G   S   G
  AF161271,IGHV6S4*01           TGG ATA CGA CAA CCT GCA GGA AAA GCT CTG GAG TGG GTC GCA CAA ATA TCT GGT AGT GGT

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 R   T               Y   Y   S   E   K   L   K       S   R   F   Q   V   S   R
  AF161271,IGHV6S4*01           AGG ACT ... ... ... TAC TAC AGT GAG AAA CTG AAA ... AGC AGG TTT CAG GTT TCC AGA

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D   T   S   S   T   T   V   T   L   T   G   Q   N   M   Q   T   E   D   T   A
  AF161271,IGHV6S4*01           GAC ACG TCC AGC ACC ACA GTA ACA TTA ACA GGG CAG AAC ATG CAG ACT GAA GAC ACA GCT

                                                _CDR3-IMGT__
                                101 102 103 104 105 106 107 
                                 V   Y   Y   C   A   R   E
  AF161271,IGHV6S4*01           GTG TAT TAC TGC GCT CGT GAA    #c
#c: rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: Friday, 22-Sep-2023 18:26:15 CEST
Author: Nathalie Bosc